FASTA

This is a tool for parsing FASTA strings into structured sequence data.

Installation

Add FASTA to your list of dependencies in mix.exs:

def deps do
  [{:fasta, "~> 0.1.0"}]
end

Usage

iex> fasta_string = "> locus6 | Gorilla gorilla
...>                 ATCGTCGCTGATAGCTGCATCAG
...>
...>                 > locus7 | Gorilla gorilla
...>                 TGGGCTGCTATGCGGATGCAGAT"
...> FASTA.Parser.parse(fasta_string)
[
  %FASTA.Datum{header: "locus6 | Gorilla gorilla", sequence: "ATCGTCGCTGATAGCTGCATCAG"},
  %FASTA.Datum{header: "locus7 | Gorilla gorilla", sequence: "TGGGCTGCTATGCGGATGCAGAT"}
]

View full documentation here.

Contributing

Bug reports and pull requests are welcome on GitHub at https://github.com/annejohnson/FASTA. This project is intended to be a safe, welcoming space for collaboration, and contributors are expected to adhere to the Contributor Covenant code of conduct.